| ชื่อเรื่อง | : | Epidemiology, classification and evolution of human rhinoviruses |
| นักวิจัย | : | McIntyre, Chloe Leanne |
| คำค้น | : | rhinovirus , recombination , evolution |
| หน่วยงาน | : | Edinburgh Research Archive, United Kingdom |
| ผู้ร่วมงาน | : | Simmonds, Peter , Sharp, Paul , Medical Research Council (MRC) |
| ปีพิมพ์ | : | 2556 |
| อ้างอิง | : | http://hdl.handle.net/1842/8197 |
| ที่มา | : | - |
| ความเชี่ยวชาญ | : | - |
| ความสัมพันธ์ | : | McIntyre CL, McWilliam Leitch EC, Savolainen-Kopra C, Hovi T, Simmonds P. 2010. Analysis of genetic diversity and sites of recombination in human rhinovirus species C. J Virol 84:10297–310. , McIntyre CL, Savolainen-Kopra C, Hovi T, Simmonds P. 2013. Recombination in the evolution of human rhinovirus genomes. Arch Virol. [Epub ahead of print] , Simmonds P, McIntyre CL, Savolainen-Kopra C, Tapparel C, Mackay IM, Hovi T. 2010. Proposals for the classification of human rhinovirus species C into genotypically assigned types. J Gen Virol 91:2409–19. , Harvala H, McIntyre CL, McLeish NJ, Kondracka J, Palmer J, Molyneaux P, Gunson R, Bennett S, Templeton K, Simmonds P. 2012. High detection frequency and viral loads of human rhinovirus species A to C in fecal samples; diagnostic and clinical implications. J Med Virol 84:536–42. , Gaunt ER, Harvala H, McIntyre CL, Templeton KE, Simmonds P. 2011. Disease burden of the most commonly detected respiratory viruses in hospitalized patients calculated using the disability adjusted life year (DALY) model. J Clin Virol. 52(3):215-21 , McLeish NJ, Witteveldt J, Clasper L, McIntyre CL, McWilliam Leitch EC, Hardie A, Bennett S, Gunson R, Carman WF, Feeney SA, Coyle PV, Vipond B, Muir P, Benschop K, Wolthers K, Waris M, Osterback R, Johannessen I, Templeton K, Harvala H, Simmonds P. 2012. Development and assay of RNA transcripts of enterovirus species A to D, rhinovirus species A to C, and human parechovirus: assessment of assay sensitivity and specificity of real-time screening and typing methods. J Clin Micro 50:2910–7. , Harvala H, Gaunt E, McIntyre CL, Roddie H, Labonte S, Curran E, Othieno R, Simmonds P, Bremner J. 2012. Epidemiology and clinical characteristics of parainfluenza virus 3 outbreak in a Haemato-oncology unit. J Infect. 65(3):246-54 , Harvala H, McIntyre CL, Imai N, Clasper L, Djoko CF, LeBreton M, Vermeulen M, Saville A, Mutapi F, Tamoufé U, Kiyang J, Biblia TG, Midzi N, Mduluza T, Pépin J, Njouom R, Smura T, Fair JN, Wolfe ND, Roivainen M, Simmonds P. 2012. High seroprevalence of enterovirus infections in apes and old world monkeys. Emerg Infect Dis 18(2):283–6. , Harvala H, Mcleish N, Kondracka J, Mcintyre CL, Leitch ECM, Templeton K, Simmonds P. 2011. Comparison of Human Parechovirus and Enterovirus Detection Frequencies in Cerebrospinal Fluid Samples Collected Over a 5-Year Period in Edinburgh : HPeV Type 3 Identified as the Most Common Picornavirus Type. J Clin Micro 896:889–896. |
| ขอบเขตของเนื้อหา | : | - |
| บทคัดย่อ/คำอธิบาย | : | Human rhinoviruses (HRV) are extremely common human respiratory pathogens, most commonly associated with mild upper respiratory tract infections. The three known species of HRV (HRV-A, -B and –C) are members of the family Picornaviridae and genus Enterovirus. In contrast to the enterovirus (EV-A-D) species that commonly infect the gut, HRV are generally thought to be acid labile with replication restricted to the respiratory tract. Investigations of the clinical correlations of HRV infections detected on diagnostic screening of respiratory specimens demonstrated no specific association between HRV variant and clinical presentation. For example, similar species distributions were observed in patients admitted to the ITU and those discharged with minor illness. Unexpectedly, screening of stool specimens for HRV showed a prevalence of 10% with viral loads similar to EV infections. These findings suggested that a reappraisal of HRV tropism and disease associations may be warranted. HRV-A and -B isolates were originally classified into 100 serotypes by serological neutralisation properties. As HRV-C is difficult to isolate, no attempt had been previously made to classify the wealth of available HRV-C sequences. To facilitate definition of novel HRV types and classification of HRV-C, a system was devised to divide HRV sequences into genotypically defined types. Pairwise VP1 nucleotide p-distance analysis revealed distinct thresholds between inter- and intra- type divergence and available sequences were classified into 77 HRV-A, 29 -B and 51 -C types. This provides a standardised basis for type definition and identification, allowing consistency in studies of genetic diversity, epidemiology and evolution. It has been adopted by the ICTV Picornavirus Study Group for classification of HRV. Although the occurrence of recombination has been documented within the coding region of EV, analysis of dated HRV sequences revealed an overall lack of intra-species recombination between three coding regions of HRV-B and -C. In contrast, full HRV-A type groups appeared to have been subject to a large number of recombination events, suggesting extensive recombination during the period of its diversification into types. Putative recombination breakpoints localised to the non-structural region. Within HRV-A and HRV-B, recombination within the 5ˈUTR was infrequent. However, over 60% of analysed HRV-C strains grouped within the HRV-A clade and two recombination hotspots were identified. An additional interspecies recombination event was detected between HRV-A/C in the 2A coding region, with putative breakpoints mapping to the boundaries of the C-terminal domain of the proteinase. The studies within this thesis provide evidence for a broadened understanding of the clinical significance of HRV. In addition, the assignment of HRV sequences into genotypically defined types allowed description of the observed genetic diversity and completion of analysis which reaffirmed the sporadic nature of recombination within the coding region of HRV. |
| บรรณานุกรม | : |
McIntyre, Chloe Leanne . (2556). Epidemiology, classification and evolution of human rhinoviruses.
กรุงเทพมหานคร : Edinburgh Research Archive, United Kingdom . McIntyre, Chloe Leanne . 2556. "Epidemiology, classification and evolution of human rhinoviruses".
กรุงเทพมหานคร : Edinburgh Research Archive, United Kingdom . McIntyre, Chloe Leanne . "Epidemiology, classification and evolution of human rhinoviruses."
กรุงเทพมหานคร : Edinburgh Research Archive, United Kingdom , 2556. Print. McIntyre, Chloe Leanne . Epidemiology, classification and evolution of human rhinoviruses. กรุงเทพมหานคร : Edinburgh Research Archive, United Kingdom ; 2556.
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