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STEROID : in silico heuristic target combination identification for disease-related signaling networks

หน่วยงาน Nanyang Technological University, Singapore

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ชื่อเรื่อง : STEROID : in silico heuristic target combination identification for disease-related signaling networks
นักวิจัย : Chua, Huey-Eng , Bhowmick, Sourav S. , Tucker-Kellogg, Lisa , Dewey Jr., C. Forbes
คำค้น : DRNTU::Engineering::Computer science and engineering
หน่วยงาน : Nanyang Technological University, Singapore
ผู้ร่วมงาน : -
ปีพิมพ์ : 2555
อ้างอิง : Chua, H. E., Bhowmick, S. S., Tucker-Kellogg, L., & Dewey Jr., C. F. (2012). STEROID: in silico heuristic target combination identification for disease-related signaling networks. Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine - BCB '12. , http://hdl.handle.net/10220/11924 , http://dx.doi.org/10.1145/2382936.2382937
ที่มา : -
ความเชี่ยวชาญ : -
ความสัมพันธ์ : -
ขอบเขตของเนื้อหา : -
บทคัดย่อ/คำอธิบาย :

Given a signaling network, the target combination identification problem aims to predict efficacious and safe target combinations for treatment of a disease. State-of-the-art in silico methods use Monte Carlo simulated annealing (mcsa) to modify a candidate solution stochastically, and use the Metropolis criterion to accept or reject the proposed modifications. However, such stochastic modifications ignore the impact of the choice of targets and their activities on the combination's therapeutic effect and off-target effects which directly affect the solution quality. In this paper, we present Steroid, a novel method that addresses this limitation by leveraging two additional heuristic criteria to minimize off-target effects and achieve synergy for candidate modification. Specifically, off-target effects measure the unintended response of a signaling network to the target combination and is generally associated with toxicity. Synergy occurs when a pair of targets exerts effects that are greater than the sum of their individual effects, and is generally a beneficial strategy for maximizing effect while minimizing toxicity. Our empirical study on the cancer-related mapk-pi3k network demonstrates the superiority of Steroid in comparison to mcsa-based approaches. Specifically, Steroid is an order of magnitude faster and yet yields biologically relevant synergistic target combinations with significantly lower off-target effects.

บรรณานุกรม :
Chua, Huey-Eng , Bhowmick, Sourav S. , Tucker-Kellogg, Lisa , Dewey Jr., C. Forbes . (2555). STEROID : in silico heuristic target combination identification for disease-related signaling networks.
    กรุงเทพมหานคร : Nanyang Technological University, Singapore.
Chua, Huey-Eng , Bhowmick, Sourav S. , Tucker-Kellogg, Lisa , Dewey Jr., C. Forbes . 2555. "STEROID : in silico heuristic target combination identification for disease-related signaling networks".
    กรุงเทพมหานคร : Nanyang Technological University, Singapore.
Chua, Huey-Eng , Bhowmick, Sourav S. , Tucker-Kellogg, Lisa , Dewey Jr., C. Forbes . "STEROID : in silico heuristic target combination identification for disease-related signaling networks."
    กรุงเทพมหานคร : Nanyang Technological University, Singapore, 2555. Print.
Chua, Huey-Eng , Bhowmick, Sourav S. , Tucker-Kellogg, Lisa , Dewey Jr., C. Forbes . STEROID : in silico heuristic target combination identification for disease-related signaling networks. กรุงเทพมหานคร : Nanyang Technological University, Singapore; 2555.