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The crystal structure of the DNA-binding domain of vIRF-1 from the oncogenic KSHV reveals a conserved fold for DNA binding and reinforces its role as a transcription factor

หน่วยงาน Nanyang Technological University, Singapore

รายละเอียด

ชื่อเรื่อง : The crystal structure of the DNA-binding domain of vIRF-1 from the oncogenic KSHV reveals a conserved fold for DNA binding and reinforces its role as a transcription factor
นักวิจัย : Hew, Kelly , Dahlroth, Sue-Li , Venkatachalam, Rajakannan , Nasertorabi, Fariborz , Lim, Bee Ting , Cornvik, Tobias Carl , Nordlund, Pär
คำค้น : DRNTU::Science::Biological sciences::Genetics
หน่วยงาน : Nanyang Technological University, Singapore
ผู้ร่วมงาน : -
ปีพิมพ์ : 2556
อ้างอิง : Hew, K., Dahlroth, S. L., Venkatachalam, R., Nasertorabi, F., Lim, B. T., Cornvik, T. C., et al. (2013). The crystal structure of the DNA-binding domain of vIRF-1 from the oncogenic KSHV reveals a conserved fold for DNA binding and reinforces its role as a transcription factor. Nucleic acids research, 41(7), 4295-4306. , http://hdl.handle.net/10220/9985 , http://dx.doi.org/10.1093/nar/gkt082
ที่มา : -
ความเชี่ยวชาญ : -
ความสัมพันธ์ : Nucleic acids research
ขอบเขตของเนื้อหา : -
บทคัดย่อ/คำอธิบาย :

Kaposi’s sarcoma-associated herpesvirus encodes four viral homologues to cellular interferon regulatory factors (IRFs), where the most studied is vIRF-1. Even though vIRF-1 shows sequence homology to the N-terminal DNA-binding domain (DBD) of human IRFs, a specific role for this domain in vIRF-1’s function has remained uncertain. To provide insights into the function of the vIRF-1 DBD, we have determined the crystal structure of it in complex with DNA and in its apo-form. Using a thermal stability shift assay (TSSA), we show that the vIRF-1 DBD binds DNA, whereas full-length vIRF-1 does not, suggesting a cis-acting regulatory mechanism in similarity to human IRFs. The complex structure of vIRF-1 DBD reveals interactions with the DNA backbone and the positioning of two arginines for specific recognition in the major grove. A superimposition with human IRF-3 reveals a similar positioning of the two specificity-determining arginines, and additional TSSAs indicate binding of vIRF-1 to an IRF-3 operator consensus sequence. The results from this study, therefore, provide support that vIRF-1 has evolved to bind DNA and plays a role in DNA binding in the context of transcriptional regulation and might act on some of the many operator sequences controlled by human IRF-3.

บรรณานุกรม :
Hew, Kelly , Dahlroth, Sue-Li , Venkatachalam, Rajakannan , Nasertorabi, Fariborz , Lim, Bee Ting , Cornvik, Tobias Carl , Nordlund, Pär . (2556). The crystal structure of the DNA-binding domain of vIRF-1 from the oncogenic KSHV reveals a conserved fold for DNA binding and reinforces its role as a transcription factor.
    กรุงเทพมหานคร : Nanyang Technological University, Singapore.
Hew, Kelly , Dahlroth, Sue-Li , Venkatachalam, Rajakannan , Nasertorabi, Fariborz , Lim, Bee Ting , Cornvik, Tobias Carl , Nordlund, Pär . 2556. "The crystal structure of the DNA-binding domain of vIRF-1 from the oncogenic KSHV reveals a conserved fold for DNA binding and reinforces its role as a transcription factor".
    กรุงเทพมหานคร : Nanyang Technological University, Singapore.
Hew, Kelly , Dahlroth, Sue-Li , Venkatachalam, Rajakannan , Nasertorabi, Fariborz , Lim, Bee Ting , Cornvik, Tobias Carl , Nordlund, Pär . "The crystal structure of the DNA-binding domain of vIRF-1 from the oncogenic KSHV reveals a conserved fold for DNA binding and reinforces its role as a transcription factor."
    กรุงเทพมหานคร : Nanyang Technological University, Singapore, 2556. Print.
Hew, Kelly , Dahlroth, Sue-Li , Venkatachalam, Rajakannan , Nasertorabi, Fariborz , Lim, Bee Ting , Cornvik, Tobias Carl , Nordlund, Pär . The crystal structure of the DNA-binding domain of vIRF-1 from the oncogenic KSHV reveals a conserved fold for DNA binding and reinforces its role as a transcription factor. กรุงเทพมหานคร : Nanyang Technological University, Singapore; 2556.